PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02323g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 322aa    MW: 35049.9 Da    PI: 6.3898
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02323g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA421.3e-13260293233
                      GATA   2 snCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                               s+Cg ++  Tp++Rrgp g+++LCnaCGl ++ k
  Niben101Scf02323g00002.1 260 SHCGISSkfTPMMRRGPTGPRSLCNACGLTWANK 293
                               699999899**********************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.7E-992127IPR010399Tify domain
PROSITE profilePS5132012.67492127IPR010399Tify domain
PfamPF062001.1E-995125IPR010399Tify domain
PROSITE profilePS5101710.467159201IPR010402CCT domain
PfamPF062033.9E-11159189IPR010402CCT domain
SMARTSM004017.3E-6253309IPR000679Zinc finger, GATA-type
PfamPF003207.7E-12260293IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-7260293No hitNo description
Gene3DG3DSA:3.30.50.103.5E-11260294IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.22E-8260293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MYRRETMNGT VHQERHQQTH FDEGKDDDDD VDVDGGGGGG GGESIDDPSH HIPYDHNYHH  60
ALHNGGAGAT MEEAAALNVV EGVAHNALYV PGVGSSNQLT LSFRGQLFVY PEVSPEKVQA  120
VMLLLDGYEV PTGTAAVNVA CQSHWASSEG PGRLNQPQRA ASLSRFREKR KERCFDKKIR  180
YTVRKEVALR IHWILVRVVY KVFSAKIDFC GLLHLTDLCF AVRMQRKKGQ FTSSKSISDE  240
AGSSSAEGNA GSSQEEPETS HCGISSKFTP MMRRGPTGPR SLCNACGLTW ANKSNDEANG  300
SDAMAAAGII TSDDENTVLP RE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616899.10.0PREDICTED: GATA transcription factor 24-like
RefseqXP_016446080.10.0PREDICTED: GATA transcription factor 24-like
TrEMBLG8Z2491e-134G8Z249_SOLLC; Hop-interacting protein THI008
STRINGSolyc10g047640.1.11e-128(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-49ZIM-like 1